1. Requirements

  • Note: RBioconductor requires R version 4.4.0 or later.

  • Install R.

  • Install RTools.

2. Linux

3. Windows

3.1. Installation

  • Start R with administrative privileges from the Start menu.

  • Enter the following commands at the R Prompt.

    if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager")
# Select the "East Asia [https]" CRAN mirror and click "OK".

BiocManager::install(version = "3.19")
# Type "a" for all and press Enter.
# Type "Yes" to install from sources and press Enter.

# Install core packages.
BiocManager::install(c("GenomicFeatures", "AnnotationDbi"), force = TRUE)

# Update installed Bioconductor packages.
BiocManager::install()

# Show installed packages.
ip <- as.data.frame(installed.packages()[,c(1,3:4)])
rownames(ip) <- NULL
ip <- ip[is.na(ip$Priority),1:2,drop=FALSE]
print(ip, row.names=FALSE)

  • Close R.